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The following publications used webKnossos for exploring large 3D electron-microscopy (EM) and light-microscopy (LM) datasets as well as collaboratively generating annotations or other tasks. Please get in touch with us if your publication is missing.


  • Anjali Gour, Kevin M. Boergens, Natalie Heike, Yunfeng Hua, Philip Laserstein,Kun Song & Moritz Helmstaedter.
    Postnatal connectomic development of inhibition in mouse barrel cortex.
    Science (2021) DOI: 10.1126/science.abb4534.

  • Yunfeng Hua, Xu Ding, Haoyu Wang, Fangfang Wang, Yan Lu, Jakob Neef, Yunge Gao, Tobias Moser & Hao Wu.
    Electron Microscopic Reconstruction of Neural Circuitry in the Cochlea.
    Cell Reports 34 (2021) DOI: 10.1101/2020.01.04.894816.

  • Haoyu Wang, Shengxiong Wang, Yan Lu, Ying Chen, Wenqing Huang, Miaoxin Qiu, Hao Wu & Yunfeng Hua.
    Cytoarchitecture and innervation of the mouse cochlear amplifier revealed by large‐scale volume electron microscopy.
    J Comp Neurol. (2021) DOI: 10.1002/cne.25137.

  • Carles Bosch, Tobias Ackels, Alexandra Pacureanu, Yuxin Zhang, Christopher J. Peddie, Manuel Berning, Norman Rzepka, Marie-Christine Zdora, Isabell Whiteley, Malte Storm, Anne Bonnin, Christoph Rau, Troy Margrie, Lucy Collinson & Andreas T. Schaefer.
    Functional and multiscale 3D structural investigation of brain tissue through correlative in vivo physiology, synchrotron micro-tomography and volume electron microscopy.
    bioRxiv (2021) DOI: 10.1101/2021.01.13.426503.






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