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Publications

Publications

The following publications used webKnossos for exploring large 3D electron-microscopy (EM) and light-microscopy (LM) datasets as well as collaboratively generating annotations or other tasks. Please get in touch with us if your publication is missing.

2022

  • Sahil Loomba, Jakob Straehle, Vijayan Gangadharan, Natalie Heike, Abdelrahman Khalifa, Alessandro Motta, Niansheng Ju, Meike Sievers, Jens Gempt, Hanno S. Meyer & Moritz Helmstaedter.
    Connectomic comparison of mouse and human cortex.
    Science (2022). DOI: 10.1126/science.abo0924.

View data in webKnossos.

  • Carles Bosch, Tobias Ackels, Alexandra Pacureanu, Yuxin Zhang, Christopher J. Peddie, Manuel Berning, Norman Rzepka, Marie-Christine Zdora, Isabell Whiteley, Malte Storm, Anne Bonnin, Christoph Rau, Troy Margrie, Lucy Collinson & Andreas T. Schaefer.
    Functional and multiscale 3D structural investigation of brain tissue through correlative in vivo physiology, synchrotron micro-tomography and volume electron microscopy.
    Nature Communications (2022) DOI: 10.1038/s41467-022-30199-6.

  • Vijayan Gangadharan, Hongwei Zheng, Francisco J. Taberner, Jonathan Landry, Timo A. Nees, Jelena Pistolic, Nitin Agarwal, Deepitha Männich, Vladimir Benes, Moritz Helmstaedter, Björn Ommer, Stefan G. Lechner, Thomas Kuner & Rohini Kuner.
    Neuropathic pain caused by miswiring and abnormal end organ targeting.
    Nature (2022). DOI: 10.1038/s41586-022-04777-z.

View data in webKnossos.

2021

  • Anjali Gour, Kevin M. Boergens, Natalie Heike, Yunfeng Hua, Philip Laserstein,Kun Song & Moritz Helmstaedter.
    Postnatal connectomic development of inhibition in mouse barrel cortex.
    Science (2021) DOI: 10.1126/science.abb4534.

View data in webKnossos.

View data in webKnossos.

2020

2019

  • Alessandro Motta, Manuel Berning, Kevin M. Boergens, Benedikt Staffler, Marcel Beining, Sahil Loomba, Philipp Hennig, Heiko Wissler, Moritz Helmstaedter. Dense connectomic reconstruction in layer 4 of the somatosensory cortex. Science (2019) DOI: 10.1126/science.aay3134.

View data in webKnossos.

  • Ali Karimi, Jan Odenthal, Florian Drawitsch, Kevin M. Boergens, Moritz Helmstaedter.
    Cell-type specific innervation of cortical pyramidal cells at their apical tufts.
    bioRxiv (2019) DOI:10.1101/571695.

View data in webKnossos.

2018

View data in webKnossos.

  • Florian Drawitsch, Ali Karimi, Kevin M Boergens, Moritz Helmstaedter.
    FluoEM, virtual labeling of axons in threedimensional electron microscopy data for long-range connectomics.
    eLife (2018) DOI:10.7554/eLife.38976.001.

View data in webKnossos.

View data in webKnossos.

2017

  • Boergens, Berning, Bocklisch, Bräunlein, Drawitsch, Frohnhofen, Herold, Otto, Rzepka, Werkmeister, Werner, Wiese, Wissler & Helmstaedter.
    webKnossos: efficient online 3D data annotation for connectomics.
    Nature Methods (2017) DOI:10.1038/NMETH.4331.

  • Helene Schmidt, Anjali Gour, Jakob Straehle, Kevin M. Boergens, Michael Brecht & Moritz Helmstaedter.
    Axonal synapse sorting in medial entorhinal cortex.
    Nature (2017) DOI:10.1038/nature24005.

View data in webKnossos.

2015

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