wkcuber.convert_nifti

def create_parser() -> argparse.ArgumentParser:

def to_target_datatype( data: numpy.ndarray, target_dtype: Union[type, str, numpy.dtype], is_segmentation_layer: bool ) -> numpy.ndarray:

def convert_nifti( source_nifti_path: pathlib.Path, target_path: pathlib.Path, layer_name: str, dtype: str, voxel_size: Tuple[float, ...], data_format: webknossos.dataset._array.DataFormat, chunk_shape: webknossos.geometry.vec3_int.Vec3Int, chunks_per_shard: webknossos.geometry.vec3_int.Vec3Int, is_segmentation_layer: bool = False, bbox_to_enforce: Union[webknossos.geometry.bounding_box.BoundingBox, NoneType] = None, use_orientation_header: bool = False, flip_axes: Union[int, Tuple[int, ...], NoneType] = None ) -> None:

def convert_folder_nifti( source_folder_path: pathlib.Path, target_path: pathlib.Path, color_subpath: str, segmentation_subpath: str, voxel_size: Tuple[float, ...], data_format: webknossos.dataset._array.DataFormat, chunk_shape: webknossos.geometry.vec3_int.Vec3Int, chunks_per_shard: webknossos.geometry.vec3_int.Vec3Int, use_orientation_header: bool = False, bbox_to_enforce: Union[webknossos.geometry.bounding_box.BoundingBox, NoneType] = None, flip_axes: Union[int, Tuple[int, ...], NoneType] = None ) -> None:

def main(args: argparse.Namespace) -> None: